Number of transcription factor binding matrices in 134 species

Species

Number of transcription factor binding matrices

adenovirus type 5
5
AEV, avian erythroblastosis virus
1
alfalfa, Medicago sativa
1
AMV, avian myeloblastosis virus
2
AS42, avian musculoaponeurotic fibrosarcoma virus
2
Aspergillus nidulans, Emericella nidulans
7
ASV 17, avian sarcoma virus 17
1
atlantic croaker, Micropogonias undulatus
2
atlantic salmon, Salmo salar
4
Avian myelocytomatosis virus CMII
1
Avian myelocytomatosis virus MC29
1
baboon, Papio hamadryas
10
barley, Hordeum vulgare
7
Beechey ground squirrel, Spermophilus beecheyi
5
Bolivian squirrel monkey, Saimiri boliviensis boliviensis
4
BPV-1, bovine papilloma virus type 1
3
bull frog, Rana catesbeiana
6
Caenorhabditis elegans
31
canary, Serinus canaria
9
Candida albicans (Yeast)
2
Candida albicans strain SC5314 (Yeast)
8
carrot, Daucus carota
1
cat, Felis silvestris catus
31
cattle, Bos taurus
169
channel catfish, Ictalurus punctatus
1
chick, Gallus gallus
331
chimpanzee, Pan troglodytes
16
Chinese hamster (Gray hamster), Cricetulus griseus
76
chinook salmon, Oncorhynchus tschawytscha
4
chipmunk, Tamias asiaticus (sibiricus)
11
clawed frog, Xenopus
23
clawed frog, Xenopus laevis
198
common carp, Cyprinus carpio
8
common marmoset, Callithrix jacchus
9
common squirrel monkey, Saimiri sciureus
4
common tree shrew, Tupaia glis belangeri
4
cotton-top tamarin, Saguinus oedipus
4
Cryptosporidium parvum Iowa II
1
Darnel ryegrass, Lolium temulentum
1
desert grassland whiptail lizard, Cnemidophorus uniparens
2
dog, Canis familiaris (Canis canis)
65
domestic pig, Sus scrofa
57
duck, Cairina moschata
6
dunnart, Sminthopsis macroura
1
E.coli, Escherichia coli
1
EBV, Epstein-Barr virus
3
Feline leukemia provirus FTT
1
firebrat, Thermobia domestica
1
fission yeast, Schizosaccharomyces pombe
6
french bean, Phaseolus vulgaris
2
frog, Rana rugosa
2
fruit fly, Drosophila
1
fruit fly, Drosophila funebris
1
fruit fly, Drosophila melanogaster
178
fruit fly, Drosophila pseudoobscura
1
fruit fly, Drosophila virilis
2
garden snapdragon, Antirrhinum majus
7
gibbon ape, Hylobates lar
37
gilthead sea bream, Sparus aurata
2
golden (Syrian) hamster, Mesocricetus auratus
90
goldfish, Carassius auratus
11
grasshopper, Schistocerca americana
1
guinea pig, Cavia porcellus
10
guinea pig, Cavia sp
3
halibut, Hippoglossus hippoglossus
2
hamster, Cricetulus sp
78
HBI, avian myelocytomatosis virus
1
horn shark, Heterodontus francisci
5
horse, Equus caballus
12
HTLV-I, human T-cell lymphotropic virus type I
2
human, Homo sapiens
1004
Israeli tilapia, Oreochromis aureus
2
Japanese eel, Anguilla japonica
1
Japanese flounder, Paralichthys olivaceus
4
Japanese pufferfish, Fugu rubripes
16
Japanese quail, Coturnix coturnix japonica
14
Kenyan clawed frog, Xenopus borealis
6
killifish, Fundulus heteroclitus
5
lemur, Eulemur fulvus collaris
6
long-tailed hamster, Cricetulus longicaudatus
14
macaque, Macaca fascicularis
11
Madagascar periwinkle, Catharanthus roseus
1
maize, Zea mays
18
Mammalia
676
Marek's disease herpesvirus (strain RB-1B) (MDHV)
2
Ma's night monkey, Aotus nancymaae
4
medaka, Oryzias latipes
9
MH2E21, avian retrovirus
1
mink, Mustela vison
21
monkey, Cercopithecus aethiops
135
mouse, Mus domesticus Torino strain
1
mouse, Mus musculus
1205
mouse, Mus spec
1
Neurospora crassa
2
newt, Notophthalmus viridescens
2
Nile tilapia, Oreochromis niloticus (Tilapia nilotica)
2
OK10, avian retrovirus
1
parsley, Petroselinum crispum (P. hortense)
8
pea, Pisum sativum
4
petunia, Petunia hybrida
2
pig, Sus scrofa
66
Plasmodium falciparum (isolate 3D7)
3
quail, Coturnix coturnix
28
rabbit, Oryctolagus cuniculus
102
rainbow trout, Oncorhynchus mykiss
26
rape, Brassica napus
2
rat, Rattus norvegicus
742
rat, Rattus rattus
4
red flour beetle, Tribolium castaneum
2
red sea bream, Pagrus major (Chrysophrys major)
2
rice, Oryza sativa
5
rice, Oryza sativa (japonica cultivar-group)
7
Saccharomyces cerevisiae S288c
2
sheep, Ovis aries
73
silk moth, Bombyx mori
1
slime mold, Dictyostelium discoideum
1
soybean, Glycine max
3
spotted hyena, Crocuta crocuta
6
starling, Sturnus vulgaris
1
sunflower, Helianthus annuus
1
sweet potato, Ipomoea batatas
1
thale cress, Arabidopsis thaliana
116
tobacco, Nicotiana tabacum
18
tomato, Lycopersicon esculentum
6
turtle, Trachemys scripta
2
Vertebrata
11
wheat, Triticum aestivum
10
wild cat, Felis silvestris
8
woodchuck, Marmota monax
8
yeast, Candida glabrata
1
yeast, Kluyveromyces lactis
2
yeast, Saccharomyces cerevisiae
351
zebra finch, Poephila guttata (Taeniopygia guttata)
2
zebra fish, Brachydanio rerio
66